[Bioc-devel] Dependency issue
It's a new Bioc package, correct? Then it just got into the Bioc release branch yday. That Bioc branch requires R 3.2.0 (the new recommended R version everyone "should" run) regardless what your package declares. Your package does not install on R < 3.2.0 using the Bioc installers, even if your package technically was designed for R 2.0.0, say. (Manual installation would probably do, but that's not recommended since it may break the Bioc ecosystem.) Henrik
On Apr 17, 2015 11:30 PM, <t.kuilman at nki.nl> wrote:
Hello everyone, I have tested whether our new package CopywriteR could be installed, but surprisingly got the message that it could not be installed under R 3.1.2: Warning message: package ?CopywriteR? is not available (for R version 3.1.2) All the dependencies of CopywriteR have R >= 3.1.0 or these depend on earlier versions of R. Can anyone tell me whether this dependency is imposed by Bioconductor or what would be the explanation for this? (I did note that during the BiocCheck checks I got the recommendation to update the R version dependency to 3.2 but I would rather have it backward compatible with older versions of R too) Thanks, Thomas R version 3.1.2 (2014-10-31) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.16.2 loaded via a namespace (and not attached): [1] tools_3.1.2 -------------------------------------------------- Thomas Kuilman, PhD Department of Molecular Oncology Netherlands Cancer Institute 1066 CX Amsterdam The Netherlands Phone: +31-20-5121841
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel