[Bioc-devel] BiocCheck error

________________________________
From: Martin Morgan <mtmorgan.bioc at gmail.com>
Sent: Tuesday, August 20, 2019 11:15 AM
To: Zhezhen Wang <zhezhen at uchicago.edu>; Vincent Carey <stvjc at channing.harvard.edu>
Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] BiocCheck error

I think this is from BiocCheck, needing access to CRAN / Bioconductor to look at package status. Likely there are issues accessing these sites (BiocManager::repositories()) from your computer. It seems not to be an issue that you as developer need to worry about, provided you are confident that you are using current packages.

Martin

?On 8/20/19, 12:04 PM, "Bioc-devel on behalf of Zhezhen Wang" <bioc-devel-bounces at r-project.org on behalf of zhezhen at uchicago.edu> wrote:

     The github repo is https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_xyang2uchicago_NPS&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=DsHb4fuqI94H_l8UosIRZgMvGezo2wlah7MV9lZVBuw&s=XROazf2UylAST2t8NvzZfcr0Sv-Y4RL6G3WloKc-yVo&e=


     ________________________________
     From: Vincent Carey <stvjc at channing.harvard.edu>
     Sent: Tuesday, August 20, 2019 10:52 AM
     To: Zhezhen Wang <zhezhen at uchicago.edu>
     Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
     Subject: Re: [Bioc-devel] BiocCheck error

     If your package that generates the error is in a github repo, please give the details.
     If it is already in Bioconductor please give the name of the package and ensure we can
     get access to the code that is generating the error.  In general it is very hard to help unless
     we can reproduce the error you report.

     On Tue, Aug 20, 2019 at 11:38 AM Zhezhen Wang <zhezhen at uchicago.edu<mailto:zhezhen at uchicago.edu>> wrote:
     Hi I am running BiocCheck on my new package and I get the following error message

       *   Checking for deprecated package usage... Warning in readLines(file, skipNul = TRUE) : InternetOpenUrl failed: 'The server name or address could not be resolved' Error in readLines(file, skipNul = TRUE) : cannot open the connection

     May I know what this error message means and how I can correct it?

     Zhezhen


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