When I do
biocLite(dependencies=TRUE)
I get a warning message saying "
dependency ?XML? is not available
If I try to install XML using:
biocLite("XML")
I get:
Running biocinstall version 2.2.6 with R version 2.7.0 (under development)
Your version of R requires version 2.2 of Bioconductor.
Warning message:
package ?XML? is not available
On checking installed packages DESCRIPTION files, I find the lines:
annotate:
DESCRIPTION: rae230aprobe, tkWidgets, XML (>= 0.92-2), hsahomology,
graph:
DESCRIPTION:Suggests: SparseM (>= 0.36), XML, RBGL
Is XML available anywhere or do the annotate package and graph package need
their DESCRIPTION files modified?
> sessionInfo()
R version 2.7.0 beta (2008-04-12 r45280)
i386-pc-mingw32
locale:
LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices datasets utils methods base
loaded via a namespace (and not attached):
[1] tools_2.7.0
cheers,
Keith
========================
Keith Satterley
Bioinformatics Division
The Walter and Eliza Hall Institute of Medical Research
Parkville, Melbourne,
Victoria, Australia