Message-ID: <c27813ad-7b18-9869-4be6-27c5711d94c6@roswellpark.org>
Date: 2017-10-13T10:27:31Z
From: Martin Morgan
Subject: [Bioc-devel] EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X)
In-Reply-To: <87h8v4tyhb.fsf@gmail.com>
On 10/12/2017 07:08 AM, Ramon Diaz-Uriarte wrote:
> Dear All,
>
> I have noticed that on the latest build report, a package I maintain,
> OncoSimulR
> (http://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/veracruz1-buildsrc.html),
I wonder if it is this issue
https://github.com/Bioconductor/BiocParallel/issues/67
which would occur if your vignette has parallel code (using 'fork'
processed via parallel::mclapply or indirectly via
BiocParallel::MulticoreParam() / doParallel etc.)
If so then the best strategy is to wait for an upstream fix.
Martin
> has status timeout on veracruz1. Package building stalls during
> creation of the vignette (that is not happening in the malbec1 ---linux---
> build). I have noticed that this same pattern (timeout with build stopped when
> creating the vignette in veracruz1 but not in malbec1) seems to affect
> other packages
> (http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#show=timeout).
>
> Is there anything we should do? Just looking at the log I do not know how
> to proceed.
>
>
> Thanks,
>
>
> R.
>
>
>
> --
> Ramon Diaz-Uriarte
> Department of Biochemistry, Lab B-25
> Facultad de Medicina
> Universidad Aut?noma de Madrid
> Arzobispo Morcillo, 4
> 28029 Madrid
> Spain
>
> Phone: +34-91-497-2412
>
> Email: rdiaz02 at gmail.com
> ramon.diaz at iib.uam.es
>
> http://ligarto.org/rdiaz
>
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