[Bioc-devel] chromosome lengths (seqinfo) for supported BSgenome builds into GenomeInfoDb?
how about:
foo <- paintBikeShed("mauve") ## :-D
more serious-like, though,
genome(gr) <- "hg19" ## and
gr <- standardizeGenome(gr, "hg19")
seem like the apotheosis of clarity and thus the way to go.
Statistics is the grammar of science.
Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
On Fri, Jun 5, 2015 at 1:49 PM, Herv? Pag?s <hpages at fredhutch.org> wrote:
On 06/05/2015 01:48 PM, Gabe Becker wrote:
I dunno, standardizeSeqInfo just seems really long for a function name
users are going to have to call.
At the risk of annoying Herve further, what about
gr <- castSeqInfo(gr, "gh19")
grrrrr!
?
~G
On Fri, Jun 5, 2015 at 1:46 PM, Tim Triche, Jr. <tim.triche at gmail.com
<mailto:tim.triche at gmail.com>> wrote:
maybe standardizeSeqinfo or fixSeqinfo is clearer after all
Statistics is the grammar of science.
Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
On Fri, Jun 5, 2015 at 1:41 PM, Gabe Becker <becker.gabe at gene.com
<mailto:becker.gabe at gene.com>> wrote:
On Fri, Jun 5, 2015 at 1:39 PM, Tim Triche, Jr.
<tim.triche at gmail.com <mailto:tim.triche at gmail.com>> wrote:
how about just
gr <- addSeqinfo(gr, "hg19")
Add sounds like it's, well, adding rather than replacing (Which
it sometimes would do.
gr <- fixSeqInfo(gr, "hg19")
instead?
~G
--
Gabriel Becker, Ph.D
Computational Biologist
Genentech Research
--
Gabriel Becker, Ph.D
Computational Biologist
Genentech Research
-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319