[Bioc-devel] RELEASE_3_14 branch freeze at 1pm EDT today.
The build report for today just finished. The landing pages will be updated accordingly in the next few hours. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Brian Schilder <brian_schilder at alumni.brown.edu>
Sent: Monday, April 11, 2022 12:34 PM
To: Nitesh Turaga <nturaga.bioc at gmail.com>
Cc: Bioconductor Devel Mailing list <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] RELEASE_3_14 branch freeze at 1pm EDT today.
Sent: Monday, April 11, 2022 12:34 PM
To: Nitesh Turaga <nturaga.bioc at gmail.com>
Cc: Bioconductor Devel Mailing list <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] RELEASE_3_14 branch freeze at 1pm EDT today.
That?s odd!, especially since I was using the same link and looked at it just moments ago. I see the check results are indeed passing now. I wonder if this was something going on with Chrome caching an old version of the page? If so, apologies for the false alarm! It does seem that the documentation page for orthogene on 3.14 isn?t showing the updates yet, but maybe that just takes some time. Same thing appears when using Safari, so I don?t think it?s a Chrome caching thing in this case. -Brian > On 11 Apr 2022, at 17:23, Nitesh Turaga <nturaga.bioc at gmail.com> wrote: > > Hi Brian, > > These are the commits we see. https://secure-web.cisco.com/10sztQfOj6Ri34L-ktjqSuemFt2DjxWfxov90k9jsD3HRFg7S5dsg7JmayS5XNjBTbLUVCiWejzGbtqZmTg7jZTPWPoRHiPCyeK8RdZCSPfLq3gKO06XBFLy_1hHcixxstS5J05_h6TQEuM_pn3SOYv9FT7tlV5Ouk6e6BZpa1R5mfDzehnUcz9m_9o-BE7D3X8emI57-Kus7oh6NplLAXfdtE_8SO78Vi7SA7-EJEX2qVhAqIZhwBstLbEsoJbCbhl8ngfWkysefk_sqwQeQskzcZZDnM4vEaLx3GEe8g341nAMtYufeh4I80fflP1ml/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2Forthogene%2F It seems to be building fine, where does it say Oct 2021? I can?t seem to find it. > > orthogene 1.0.2 (landing page) > Snapshot Date: 2022-04-10 01:55:06 -0400 (Sun, 10 Apr 2022) > git_url: https://secure-web.cisco.com/1NSelIXLJarUCa_inF-FbfaYlU-m0UELigiQDiftXZs3e0Hz32jULbN9HdbrVCdY38veQVTzPcpXuKsO1OkNGDjnltAhtEBwzaDA9FuZYmBMrjE9LzPjDYR9JA7e96hVtgc42_2b2tmSNlUqVuLSAW3wxqqAZcLgDJ6j1sNDehSY_XnoiVx84h5FIK6xt6oaWzZH9_yeapZ0bk5o43Gpq0ILhqs2frSJH8GYllwyPRmYJRBeFi5hcpEimOEvxZ9qoi2fB9f2_uc8X5Di8xSG6o17gNiR6mK_0uRv5exbzXfg6PWIn0lJWuX7IFQLBKBCz/https%3A%2F%2Fgit.bioconductor.org%2Fpackages%2Forthogene > git_branch: RELEASE_3_14 > git_last_commit: be43cf5 > git_last_commit_date: 2022-04-08 07:13:46 -0400 (Fri, 08 Apr 2022) > > > commit 8354ef81f4fe68acac346fb0ab349e41204154a7 (HEAD -> master, origin/master, origin/HEAD) > Author: bschilder <brian_schilder at alumni.brown.edu> > Date: Fri Apr 8 12:06:34 2022 +0100 > > update readme [skip ci] > > commit d1b3a2a5f0d74e02132ff695415013f0b9635eef > Author: bschilder <brian_schilder at alumni.brown.edu> > Date: Fri Apr 8 12:00:46 2022 +0100 > > Increase test coverage > > > Best, > > Nitesh > > > Nitesh Turaga > Scientist II, Department of Data Science, > Bioconductor Core Team Member > Dana Farber Cancer Institute > >> On Apr 11, 2022, at 12:19 PM, Brian Schilder <brian_schilder at alumni.brown.edu> wrote: >> >> Hi Nitesh, >> >> I pushed a number of fixes to orthogene on Bioc 3.14 over the last couple weeks, most recently last Friday (April 10th). But the VM report is saying my last commit was October 2021, which was v1.0.0 when it should be v1.0.2 now. As a consequence orthogene is not passing checks. Do you know what might be going on here? I didn?t encounter any errors or warnings when I made the upstream pushes. >> >> Best, >> Brian >> >>> On 11 Apr 2022, at 17:00, Nitesh Turaga <nturaga.bioc at gmail.com> wrote: >>> >>> Dear Maintainers, >>> >>> Please keep in mind that we are on schedule for our release as given in http://secure-web.cisco.com/1gHTK3d2SmugXjM-fl1jC1iq_wl5EMTGd4mP2y4VJLmrrQtRX04U9W540Ek8kDnbh_awI23GTky6x2cnqlikuHCYy5NvYzPFfN31AqaLVz99riEmABMiBEzAapFBqfGPthESByG9QiLudxwDOmOh-zP__sIyzvC66XXthU4L3f6aqvwH-t6G8wRSSQrblZCHuo37UzuGSVAQyKVc6IcwfC2rGNFnUMMtCc1wMOnoq4H4SHV8rFGpTSMD2fnqJMqhtqb1QahcawU9QodJ871-fvdtJaYw4YZk9XVbNQaBW8XDZ7gbwwL0FVIgpyZgv5SvJ/http%3A%2F%2Fbioconductor.org%2Fdevelopers%2Frelease-schedule%2F >>> >>> Today (April 11th 2022) at 1pm EDT, I will freeze the commits to the RELEASE_3_14 branch in Bioconductor. This is for all packages (software, data-experiment and workflow). >>> >>> After 1pm today, you will not be able to push to the RELEASE_3_14 branch. I will send an email post freeze as well. >>> >>> Best regards, >>> >>> Nitesh >>> >>> >>> Nitesh Turaga >>> Scientist II, Department of Data Science, >>> Bioconductor Core Team Member >>> Dana Farber Cancer Institute >>> >>> _______________________________________________ >>> Bioc-devel at r-project.org mailing list >>> https://secure-web.cisco.com/1MiIzgRxYyMucOF9njSdZIdEiTRjJ9Bcx1MkvYUSLFxxHT0oHhpm7r51gGJ3dIukxPB6Cr1tI5q4-C4XL_6Cq8OPSei2bI-VQ9RfMqxZpYjg1wEGRElYfNM5pBoczsalnW37pw-7ohuXQ-ZFj6OsnAv-j4C6_AiSey1PRdv2fXCZowAk7Ewf8tQGVPksv97B1UXwxS9tZo1SPvA37KR3BccG7v8qXZR87mMVEvJdC2Wxxy4OUVn1oWJw0P2AKpsQlrY5reQHMj6kzye9yeQ88Zd1Tucpj7BtzSMcORK9dv5kFIEvZiXAKWEVE1pcCPj9w/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel >> > _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1MiIzgRxYyMucOF9njSdZIdEiTRjJ9Bcx1MkvYUSLFxxHT0oHhpm7r51gGJ3dIukxPB6Cr1tI5q4-C4XL_6Cq8OPSei2bI-VQ9RfMqxZpYjg1wEGRElYfNM5pBoczsalnW37pw-7ohuXQ-ZFj6OsnAv-j4C6_AiSey1PRdv2fXCZowAk7Ewf8tQGVPksv97B1UXwxS9tZo1SPvA37KR3BccG7v8qXZR87mMVEvJdC2Wxxy4OUVn1oWJw0P2AKpsQlrY5reQHMj6kzye9yeQ88Zd1Tucpj7BtzSMcORK9dv5kFIEvZiXAKWEVE1pcCPj9w/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. 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