Message-ID: <CAFDcVCSw4Fv7hMRhrsXPpJs4Y1TxvX1jednSNN0wWoFmsMha4g@mail.gmail.com>
Date: 2026-03-20T14:12:52Z
From: Henrik Bengtsson
Subject: [Bioc-devel] rworkflows temporary CRAN removal and next steps
In-Reply-To: <CAN9SdZ7PAdP6emfJ6PhY1f+1v_K8FZ=T5+Dvy3fH_EkjKNYf2Q@mail.gmail.com>
Thanks for the update.
Just in case, there is indeed a CRAN check NOTE. On
https://cran-archive.r-project.org/web/checks/2026/2026-03-03_check_results_rworkflows.html,
there's a link to 'donttest' check logs:
https://www.stats.ox.ac.uk/pub/bdr/donttest/rworkflows.out
which reports:
* checking for new files in some other directories ... NOTE
Found the following files/directories:
?~/.cache/R/rworkflows?
?~/.cache/R/rworkflows/versions-manifest.json?
I think the rule is that unless those existed before R CMD check started,
they shouldn't be there afterwards, i.e. running checks shouldn't leave
anything behind.
You can manually check for this, but it's probably easier to set something
like
Sys.setenv(XDG_CACHE_HOME = tempdir())
at the beginning of your test scripts.
Henrik
On Fri, Mar 20, 2026, 05:16 Hiranyamaya Dash <hdash.work at gmail.com> wrote:
> Dear Bioconductor package developers,
>
> Thank you for using rworkflows and for your continued support.
>
> Unfortunately, CRAN has deprecated the package due to unresolved errors,
> despite no errors or warnings being reported in their logs. We are actively
> working to have the package reinstated, but CRAN has not been responsive
> over the past few weeks. As a result, we have initiated a resubmission.
>
> As a temporary measure, we recommend removing rworkflows from Suggests.
> GitHub Actions workflows will remain unaffected. The only change is that
> developers will need to manually install rworkflows from GitHub in order to
> knit the README (if rworkflows functions are used here). While not ideal,
> this does not impact package functionality and can be reverted once
> rworkflows is restored on CRAN.
>
> We appreciate your patience and understanding, and we will keep you updated
> on any progress.
>
> Kind regards,
>
> Hiru
>
> --
>
> *Hiranyamaya (Hiru) Dash*
> Research Assistant in Computational Genomics
> UK Dementia Research Institute at Imperial College London
>
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>
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> Bioc-devel at r-project.org mailing list
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>
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