[Bioc-devel] R source code files of package vignettes

To make it even easier you can have a
\SweaveOpts{eval=FALSE}
in your preamble. This sets eval=FALSE to be the default value for all 
chunks.

Kasper

On Jul 28, 2009, at 10:27 , Herv? Pag?s wrote:

Hi Joern,

One possible workaround would be to replace the dummy Rnw file by a
version of the true vignette where all the code chunks are tagged
with eval=FALSE. Then you would need to keep in sync 2 versions of the
same file: the eval=TRUE and the eval=FALSE versions. But that can
easily be achieved on Unix with a 2 line shell script using the sed
command.

Cheers,
H.

Joern Toedling wrote:

Dear all,
I would welcome your feedback on a small problem regarding vignettes.
For the data package ccTutorial, I pre-build the vignettes on my 
machine, as
building these vignettes takes considerable time. The folder 
'inst/doc' only
contains dummy versions of the two vignettes and a Makefile which 
copies the
pre-built vignettes from another directory into 'doc' after running 
Sweave on
the dummy files.
I would also like to provide the source code of the pre-built vignettes
in the doc directory (as these are also linked on the BioC package 
web page).
However, having the *R files copied from the other directory into doc 
via use
of the Makefile is pointless as it seems that the command Stangle is 
run on
the dummy vignettes afterwards. So the source code files in the 
directory
'doc' only contain the non-relevant source code of the dummy files. 
Do you
know of a way to avoid having Stangle run on the dummy files? Or is 
there
another way to copy files afterwards?
Cheers,
Joern
---
Joern Toedling
Institut Curie -- U900
26 rue d'Ulm, 75005 Paris, FRANCE
Tel. +33 (0)156246926

-- 
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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