[Bioc-devel] annotate missing from devel
Hi Herve,
Herve Pages wrote:
Hi Kasper, Kasper Daniel Hansen wrote:
The checks seems fine but I cannot obtain it with biocLite under 2.8.0
The "orange" builds (i.e. the builds for R-2.7/BioC-2.2) look fine for annotate: http://bioconductor.org/checkResults/2.2/bioc-LATEST/annotate/lamb1-buildsrc.html but not the "aquarium" builds (i.e. the builds for R-2.8/BioC-2.3): http://bioconductor.org/checkResults/2.3/bioc-LATEST/annotate/wilson1-buildsrc.html Therefore annotate will not be pushed to the BioC 2.3 public repo until someone fixes its vignette.
Unfortunately that vignette is unfixable - it is based on the old Homologene/env packages, so will need to be almost completely rewritten to use the new InParanoid/SQLite packages. I should be able to replace it with something reasonable either this week or the next. In the meantime I will just rename it so it won't interfere with the build. Best, Jim
Cheers, H. PS: The general page for all our builds is: http://bioconductor.org/checkResults/
Kasper
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