Message-ID: <669f2ead-ebf3-52db-1d7e-0aa9a33003e1@roswellpark.org>
Date: 2017-10-25T01:21:03Z
From: Martin Morgan
Subject: [Bioc-devel] Install directly from the bioconductor git repo?
In-Reply-To: <CAEiDEr8AStPqa-yVkwAZ7ppC_N=ZC3hOS097p4FZt8BJq9YN9A@mail.gmail.com>
On 10/24/2017 04:16 PM, Stian L?gstad wrote:
> Can I install a package directly from a Bioconductor git repository? Like I
> can for example using devtools and a github repository like this:
> `install_git("git://github.com/hadley/stringr.git")`? What would be the
> link for a Bioconductor package?
install_git("https://git.bioconductor.org/packages/BiocGenerics.git")
seems to work.
>
> Also, can I link directly to a source code file somehow? Like I can with
> the github repository:
> https://github.com/tidyverse/stringr/blob/master/R/case.R#L21
no, not at the moment, except of course for packages that are mirrored
on github
https://github.com/Bioconductor/BiocGenerics/blob/master/DESCRIPTION#L4
Martin
>
> Thank you.
>
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