[Bioc-devel] recent changes in ggplot2 break some packages
Dear All, At least some packages (partial list in links below) are failing checks in both release and devel; the error logs for Linux, Windows, and Mac all show "Error: processing vignette 'OncoSimulR.Rmd' failed with diagnostics: [GeomTextRepel/PositionQuasirandom/etc] was built with an incompatible version of ggproto. Please reinstall the package that provides this extension." A partial list for devel: http://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/malbec2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/cytofkit/malbec2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/maftools/malbec2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/MoonlightR/malbec2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/pcaExplorer/malbec2-buildsrc.html http://bioconductor.org/checkResults/devel/bioc-LATEST/scater/malbec2-buildsrc.html For release: http://bioconductor.org/checkResults/release/bioc-LATEST/OncoSimulR/malbec1-buildsrc.html http://bioconductor.org/checkResults/release/bioc-LATEST/cytofkit/malbec1-buildsrc.html etc This seems related to very recent changes in ggplot2 (and other people have reported similar problems in oter forums). It is fixed reinstalling ggplot2 and the other package that depends on it (e.g., ggrepel)[1]. Should we just wait for ggplot2 and ggrepel to be reinstalled in the build machines? How often do these happen? Best, R. [1] And, at least for the package I maintain, OncoSimulR, there are no issues with R-devel in my local machines or with Travis (https://travis-ci.org/rdiaz02/OncoSimul), or Appveyor (https://ci.appveyor.com/project/rdiaz02/OncoSimul).
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
http://ligarto.org/rdiaz