Hello,
I am trying to align two sequences, in DNAString format using the R command pairwiseAlignment.
I keep getting this error:
pairwiseAlignment(si,sj)
Error in .Call2("XStringSet_align_pairwiseAlignment", pattern, subject, :
max(nchar(pattern) * nchar(subject)) is too big (must be <= 2147483647)
The 2 DNAstrings are si and sj, and are 108,007 bp and 120,698 bp long, respectively.
Can someone help me? Are the sequences too long perchance?
Thanks, Matthew
Sent with [ProtonMail](https://protonmail.com/) Secure Email.