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[Bioc-devel] Building a package that depends on flowCore

Greg Finak 
Hi, Davide 
I'm not as familiar with the R package build system as others on the list, so it's difficult for me to diagnose your problem from the information given, but I can offer a few suggestions. In the Namespace file, try explicitly importing just the classes, methods and functions from flowCore that your package actually uses. I think you woukd want flowCore in the Depends field of your Description file. Finally, have a look at other packages that extend flowCore, like the flowMerge package for example, and see how they handle it. In my experience, masked methods don't usually lead to installation failure. Perhaps you could provide more output from R CMD check, and the content of your Namespace and Description files.
Cheers
Greg

Sent from my iPhone
On 2011-03-30, at 2:10 AM, "Davide Rambaldi" <davide.rambaldi at ifom-ieo-campus.it> wrote:

            

      
      
      
    

        

      
      
    

  
  


  


  


  
  

    

  

    
      
    
    
Thread (3 messages)

  

  

    
            
        Davide Rambaldi
        
        Building a package that depends on flowCore
      
      Mar 30
    
    
      
            
        Greg Finak
        
        Building a package that depends on flowCore
      
      Mar 30
    
    
      
            
        Nishant Gopalakrishnan
        
        Building a package that depends on flowCore
      
      Mar 31