[Bioc-devel] About the size limitation of the package
Hi Stuart, Thanks for the cool suggestion. I have uploaded the model to bioconductor S3 bucket and now everything work perfectly, but I would also check out your suggestion. Thanks, You Zhou ???: Stuart Lee <lee.s at wehi.edu.au> ??: 2021?5?26? ??? 23:55 ???: "Kern, Lori" <Lori.Shepherd at roswellpark.org>, You Zhou <youzhoulearning at gmail.com>, "bioc-devel at r-project.org" <bioc-devel at r-project.org> ??: Re: About the size limitation of the package Hi You and Lori, Are fitted models in scope for ExperimentHub? I thought it was more for data. Maybe there should be a ModelHub for developers to include trained models from papers in their packages? @You: if that model has been fitted in R take a look at https://github.com/tidymodels/butcher for some ways of reducing it?s size. Thanks Stuart
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Kern, Lori <Lori.Shepherd at RoswellPark.org>
Sent: Wednesday, 26 May 2021 10:01 PM
To: You Zhou <youzhoulearning at gmail.com>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] About the size limitation of the package
Sent: Wednesday, 26 May 2021 10:01 PM
To: You Zhou <youzhoulearning at gmail.com>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] About the size limitation of the package
Please consider using Experiment Hub to host the large data file. More information can be found here: https://bioconductor.org/packages/devel/bioc/vignettes/AnnotationHub/inst/doc/CreateAHubPackage.html Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of You Zhou <youzhoulearning at gmail.com> Sent: Wednesday, May 26, 2021 5:09 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] About the size limitation of the package Dear Bioc team, I am compiling a package ?m6Aboost? and planning to submit it in the Bioconductor. This package using a trained machine learning model to identify the correct m6A signals from the miCLIP2 data set (more detail about this machine learning model can be found in our paper https://www.biorxiv.org/content/10.1101/2020.12.20.423675v1). Now I meet a problem: the size of this machine learning model is 10 Mb, which is bigger than 5 Mb. Since this model is crucial for the package, I was wondering whether I can ignore the warning message about the size limitation. Thank you : ) Best regards, You Zhou [[alternative HTML version deleted]] This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel