[Bioc-devel] [BioC] Can\'t load new BioC packages
Hej Dan! You might get that question a lot in the next days, maverick is pretty popular :-). Could you add a temporary check in Bioclite() for the OS and report a more appropriate error message if it is running OSX maverick? I bet this is going to save you some email traffic ;-) Otherwise we can also take turn to answer them :-) Nico --------------------------------------------------------------- Nicolas Delhomme The Street Lab Department of Plant Physiology Ume? Plant Science Center Tel: +46 90 786 7989 Email: nicolas.delhomme at umu.se SLU - Ume? universitet Ume? S-901 87 Sweden ---------------------------------------------------------------
On 15 Apr 2014, at 16:29, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
Hi David, You need to use the Snow Leopard version of R instead of the Mavericks version, see https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html for more information. Dan ----- Original Message -----
From: "David Lapointe [guest]" <guest at bioconductor.org> To: bioconductor at r-project.org, "david lapointe" <david.lapointe at tufts.edu> Sent: Tuesday, April 15, 2014 7:16:16 AM Subject: [BioC] Can\'t load new BioC packages The new packages don't seem to be available. This is a confusing message since I do have an internet connection and bioconductor,org is available and up. David
source("http://bioconductor.org/biocLite.R")
Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help
biocLite()
Error: 'no packages in repository (no internet connection?)' while trying http://bioconductor.org/packages/2.14/bioc -- output of sessionInfo():
sessionInfo()
R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods [7] base other attached packages: [1] BiocInstaller_1.14.1 loaded via a namespace (and not attached): [1] tools_3.1.0 -- Sent via the guest posting facility at bioconductor.org.
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