[Bioc-devel] edgeR estimateGLMRobustDisp Fails when Called From A Package
Hi Dario, Isn't an easier fix to simply add ImportFrom(limma, loessFit) in your NAMESPACE file? Best, Jim
On 6/26/2014 12:00 AM, Dario Strbenac wrote:
Hello, I am writing a package that has a function that uses estimateGLMRobustDisp, leading to an error : Error in dispBinTrend(y, design, offset = offset, method.trend = "loess", : could not find function "loessFit" Calls: edgeRselection ... estimateGLMTrendedDisp -> estimateGLMTrendedDisp.default -> dispBinTrend I import estimateGLMRobustDisp from edgeR in my NAMESPACE file. This error is because edgeR depends on limma, rather than importing from it. I want to avoid using parent.env<- and .onLoad to get around the problem. Is there any hope of modifying the edgeR description file to have limma in the Imports field ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia
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