From: "Tim Triche, Jr." <tim.triche at gmail.com>
To: bioc-devel at r-project.org
Cc: "Dan Tenenbaum" <dtenenba at fredhutch.org>
Sent: Friday, June 26, 2015 3:12:26 PM
Subject: SSL support in Docker images?
Hi all,
I was looking to see whether my proposed DMRcate changes would run
smoothly within the devel_microarray Docker image, and ran into this
blocker (below). So I can't use install_github to see whether the
addition of the changes I've proposed will integrate smoothly with
the devel docker images. This is a nice sanity check for me, and I'd
like to be able to use it... any idea of whether SSL, git2r, and
devtools will be possible soon?
install.packages(c("git2r"))
Installing package into ?/usr/local/lib/R/site-library?
(as ?lib? is unspecified)
trying URL ' http://cran.rstudio.com/src/contrib/git2r_0.10.1.tar.gz
'
Content type 'application/x-gzip' length 1014817 bytes (991 KB)
==================================================
downloaded 991 KB
Bioconductor version 3.1 (BiocInstaller 1.18.3), ?biocLite for help
* installing *source* package ?git2r? ...
** package ?git2r? successfully unpacked and MD5 sums checked
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for library containing inflate... -lz
checking for library containing SSL_library_init... no
configure: error: in `/tmp/RtmpQMHf20/R.INSTALLa7236dd394b/git2r':
configure: error: OpenSSL library required
See `config.log' for more details
ERROR: configuration failed for package ?git2r?
* removing ?/usr/local/lib/R/site-library/git2r?
The downloaded source packages are in
?/tmp/RtmpLHhGwv/downloaded_packages?
Warning message:
In install.packages(c("git2r")) :
installation of package ?git2r? had non-zero exit status