[Bioc-devel] Need some help to submit a R package.
Dear Sir, I have found some problem in github link given below: https://github.com/Bioconductor/Contributions/issues/713 The link is not opening. Is there any problem in github repository? Please check it. Thank you regards Pijush On Thu, Apr 26, 2018 at 2:32 PM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:
Wait for the reviewer to comment further on your package. On 04/26/2018 02:20 AM, Pijush Das wrote:
Dear Sir,
I have found that my package sigFeature had passed all the built test
without errors or warnings
on all platforms.
What should I do next ?
regards
Pijush
On Tue, Apr 24, 2018 at 10:56 PM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org <mailto:Lori.Shepherd at roswellpark.org>>
wrote:
It doesn't look like the webhook was ever initialized
Please follow the instructions here:
https://github.com/Bioconductor/Contributions/blob/master/
CONTRIBUTING.md#adding-a-web-hook
<https://github.com/Bioconductor/Contributions/blob/master/
CONTRIBUTING.md#adding-a-web-hook>
After the webhook is set up you will need to do another version bump
to trigger the build - Please post further correspondence regarding
your package submission on the open github issue
https://github.com/Bioconductor/Contributions/issues/713
<https://github.com/Bioconductor/Contributions/issues/713>
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------
------------
*From:* Pijush Das <topijush at gmail.com <mailto:topijush at gmail.com>>
*Sent:* Tuesday, April 24, 2018 11:33:14 AM
*To:* Shepherd, Lori
*Cc:* Morgan, Martin; bioc-devel at r-project.org
<mailto:bioc-devel at r-project.org>
*Subject:* Re: [Bioc-devel] Need some help to submit a R package.
Dear sir,
I have uploaded the sigFeature package ( Version: 0.99.1) in the
existing git repository and did a version bump. The link is given
below.
https://github.com/pijush1285/sigFeature
<https://github.com/pijush1285/sigFeature>
But still now I am not getting any response.
Is there required to add the web hook again ?
Thank you
regards
Pijush
On Tue, Apr 24, 2018 at 5:34 PM, Shepherd, Lori
<Lori.Shepherd at roswellpark.org
<mailto:Lori.Shepherd at roswellpark.org>> wrote:
We like to keep track of the changes and have the reviews in one
place. If possible it would be better to replace the contents
of existing git repository and do a version bump.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------
------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org
<mailto:bioc-devel-bounces at r-project.org>> on behalf of Pijush
Das <topijush at gmail.com <mailto:topijush at gmail.com>>
*Sent:* Tuesday, April 24, 2018 7:43:04 AM
*To:* Morgan, Martin
*Cc:* bioc-devel at r-project.org <mailto:bioc-devel at r-project.org>
*Subject:* Re: [Bioc-devel] Need some help to submit a R package.
Dear Sir,
I have solved most of the issues raised by the reviewers.
There were significant amount of changes in the original code.
So should we submit our package (sigFeature) as a new submission
or replace the contents of existing git repository with version
increment.
regards
Pijush
On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
martin.morgan at roswellpark.org
<mailto:martin.morgan at roswellpark.org>> wrote:
> If you are still having problems understanding warnings, it is
probably
> better to use the github issue -- it may take some time to get
an answer,
> because the reviewers have many responsibilities.
>
> It looks like your 'webhook' is not correct, and that you are
not changing
> the version of your package (from 0.99.0 to 0.99.1, 0.99.2,
...) when you
> wish to generate another build report. @grimbough indicated in
the github
> issue how to address these problems.
>
> Martin
>
>
> On 04/16/2018 03:58 AM, Pijush Das wrote:
>
>> Dear Ruqian,
>>
>>
>> Yes sir, I have opened the build report which is a link to an
HTML page
>> with details.
>> But I unable to understand why the WARNING massages are
showing.
>>
>> Three days before the other reviewers had made some comments
and asked me
>> to address
>> those issues and also told me to solve the NOTEs produced by
BioCheck.
>>
>> Presently I am working on the sigFeature package to address
those issues.
>> I shall communicate soon after solving those issues.
>>
>>
>> Thank you
>>
>>
>> Regards
>> Pijush
>>
>>
>>
>> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
>> ruqianl at student.unimelb.edu.au
<mailto:ruqianl at student.unimelb.edu.au>>
>> wrote:
>>
>> Hi Pijush,
>>>
>>> Did you open the build report which is a link to an HTML page
with
>>> details
>>> of the warning?
>>>
>>>
>>> Regards,
>>> Ruqian
>>>
>>>
>>>
>>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das <
topijush at gmail.com <mailto:topijush at gmail.com>> wrote:
>>>
>>> Dear Sir,
>>>>
>>>>
>>>> I have submitted an R package named "sigFeature" in Github
and also
>>>> Bioconductor 9 days before.
>>>> The reviewers only said that there is some WARNING problem
in the
>>>> package
>>>> in different platform.
>>>>
>>>> But after that they are not communicating any thing
regarding the
>>>> package.
>>>> I have checked the package
>>>> windows and Ubuntu it is working fine.
>>>>
>>>> I unable to understand what actually the problem is ?
>>>> And the reviewers are not communicating about the problem.
Though I am
>>>> getting lots of email from bioc-devel dealing with others
package
>>>> problem .
>>>>
>>>> Please suggest me what should I do now ?
>>>>
>>>>
>>>>
>>>>
>>>> Thank you
>>>>
>>>>
>>>>
>>>> Regards
>>>> Pijush
>>>>
>>>>
>>>>
>>>>
>>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
>>>> Nitesh.Turaga at roswellpark.org
<mailto:Nitesh.Turaga at roswellpark.org>> wrote:
>>>>
>>>> Hi,
>>>>>
>>>>> Please read through this documentation.
>>>>>
>>>>> http://bioconductor.org/developers/package-submission/
>>>>>
>>>>>
>>>>> Nitesh
>>>>>
>>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das <topijush at gmail.com
<mailto:topijush at gmail.com>> wrote:
>>>>>>
>>>>>> Dear Sir,
>>>>>>
>>>>>>
>>>>>>
>>>>>> I have developed an R package. I want to submit this
package in
>>>>>> Bioconductor.
>>>>>> Please help me to submit the R package.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> regards
>>>>>> Pijush Das
>>>>>>
>>>>>> [[alternative HTML version deleted]]
>>>>>>
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