[Bioc-devel] R v3.0.0: It's now official and BioC devel needs some updates
On Sun, Dec 16, 2012 at 10:42 PM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
On Sun, Dec 16, 2012 at 1:16 PM, Henrik Bengtsson <hb at biostat.ucsf.edu> wrote:
"It is intended that this version will be released as R 3.0.0." They've already changed the R-devel version number from 2.16.0 to 3.0.0, which causes biocLite() et al. to fail, e.g.
source("http://www.bioconductor.org/biocLite.R")
Installing package into 'C:/Users/hb/R/win-library/3.0' (as 'lib' is unspecified) Warning: unable to access index for repository http://www.bioconductor.org/packa ges/2.12/bioc/bin/windows/contrib/3.0 package 'BiocInstaller' is available as a source package but not as a binary 'biocLite.R' failed to install 'BiocInstaller', use 'install.packages("BiocInstaller", repos="http://www.bioconductor.org/packages/2.12/bioc")' Warning message: package 'BiocInstaller' is not available (for R Under development)
This now works. Note that we have not yet updated our devel build machines to R-3.0.0, so there may be binary incompatibilities in Windows and Mac packages. If in doubt, install from source.
That was quick - I've confirmed that it works with one package. Thanks. Henrik
Dan
/Henrik
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