[Bioc-devel] Turning an existing "software" package into a "data" package
That page should disappear anyways since it transition from software to data-experiment, the page for the correct report will be located in the Experiment Data builds. You can ignore this.
From: Geistlinger, Ludwig <Ludwig_Geistlinger at hms.harvard.edu>
Sent: Tuesday, July 26, 2022 10:38 AM
To: Kern, Lori <Lori.Shepherd at RoswellPark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: Turning an existing "software" package into a "data" package
Sent: Tuesday, July 26, 2022 10:38 AM
To: Kern, Lori <Lori.Shepherd at RoswellPark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: Turning an existing "software" package into a "data" package
Hi Lori, Thank you for your help with turning my BioPlex package into a data package. It looks like the transition has worked out overall, however it seems that there is a timeout on the arm64 mac builder (kjohnson) only (already since a couple of days): http://bioconductor.org/checkResults/devel/bioc-LATEST/BioPlex/<http://secure-web.cisco.com/1qt2YCAxdF88901u5NQvSqe7I6Y6Ksr8SpqyPxao-jHaEppCjY8VB529kj8NxkT2qSXSqNibByp2viqVW1ajQ_QcfNUaEQ03F7djJm8wTSOdu1YLYnvbZ9wdt40ryKg1g7pWns7fJDllfN4tHJA-VVpwqp-Zmi4iqZaPFGsqLARjnlYfj8L5iowCtdXBRZCDEy0lAUS-w72no_6FZ1VRicUkss4volKbSNBxTKAuFgr6CT0ySai_LZdNbLVAKmC0AQdaS3dPNO22IsGwgwof0hJcqKnz4NmF2_pd4YiW-JVlDxv_E6dWvQUg_-le4cP7D/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FBioPlex%2F> I wonder whether there is anything to do here from my side or whether this is some sort of hiccup coming from the transition? Thanks & Best, Ludwig ________________________________ From: Geistlinger, Ludwig <Ludwig_Geistlinger at hms.harvard.edu> Sent: Tuesday, July 12, 2022 12:23 PM To: Kern, Lori <Lori.Shepherd at RoswellPark.org>; bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: Re: Turning an existing "software" package into a "data" package Thanks, Lori, I have updated the biocViews on the devel branch of the BioPlex package. Best, Ludwig ________________________________ From: Kern, Lori <Lori.Shepherd at RoswellPark.org> Sent: Tuesday, July 12, 2022 10:44 AM To: Geistlinger, Ludwig <Ludwig_Geistlinger at hms.harvard.edu>; bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: Re: Turning an existing "software" package into a "data" package I have updated the package manifest files to move BioPlex from software to data experiment. Please update the biocViews in the description as soon as possible Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Geistlinger, Ludwig <Ludwig_Geistlinger at hms.harvard.edu> Sent: Tuesday, July 12, 2022 9:53 AM To: bioc-devel at r-project.org <bioc-devel at r-project.org> Subject: [Bioc-devel] Turning an existing "software" package into a "data" package Hi Lori, As I had indicated in personal communication, my BioPlex package https://secure-web.cisco.com/1M0Ol-q4grmap1gxOCeo1YCtQuJzCnpJgKoMmX1c8_2U6oHAC_e7dgcrdk78VJX8t5HMHJRC7VxldYKdR2pnTK15XZVqdIyKPWMc2uRRZbZzN68z6Z2FIKREC852xoe3xhY5TVjOsRAratuXkm0MX2sb246TpGnK-SP9EcE8LIUrJhDWVHqYXBOZomTgGkIQtM-Nffx_piMcMTZpJpmHuH_CV46RmfjdgaQQhPhI0yqSJo4G37UaZyRSMuPmUtsjrdYKno8AJH2SHfZf7toeINWXD_LvVuETGDaM9Dma9u3wsGxwqZSDXyxGdT8j3ZpBD/https%3A%2F%2Fbioconductor.org%2Fpackages%2FBioPlex<https://secure-web.cisco.com/1MnCJsm1HpihpxKw75EO73fYty4HDGAxVSKDb8AVLeKOnkYpz113AQAP8H7FpZ06a0W1aoxfEU5N3_u4AtoMGn4wQWTSpE4QvJdNGDAseOslYT7oXzfjr0XGq6Lm6JnfIfpyheGkG-hJGLy2iZtn7pqCotJlTSAo3XKgDka3cZWN8eYtBjU-8rv87C2_YcdsD8xpax9AT79NBtJmPhO1TqDa0HUlci6XnsA7kzWkk5xuJ1DfFIm0wyOmySNXwQYGeLwQqKUy2LFlmcdOr0QE240TjULkbclTCeHgMo7P895DOb2mZq-YKz0ev7sLgN9Ju/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cisco.com_1M0Ol-2Dq4grmap1gxOCeo1YCtQuJzCnpJgKoMmX1c8-5F2U6oHAC-5Fe7dgcrdk78VJX8t5HMHJRC7VxldYKdR2pnTK15XZVqdIyKPWMc2uRRZbZzN68z6Z2FIKREC852xoe3xhY5TVjOsRAratuXkm0MX2sb246TpGnK-2DSP9EcE8LIUrJhDWVHqYXBOZomTgGkIQtM-2DNffx-5FpiMcMTZpJpmHuH-5FCV46RmfjdgaQQhPhI0yqSJo4G37UaZyRSMuPmUtsjrdYKno8AJH2SHfZf7toeINWXD-5FLvVuETGDaM9Dma9u3wsGxwqZSDXyxGdT8j3ZpBD_https-253A-252F-252Fbioconductor.org-252Fpackages-252FBioPlex%26d%3DDwMFAg%26c%3DWO-RGvefibhHBZq3fL85hQ%26r%3DyPjzQ73-fmNXaJPV1gz9oHaqor6pHH3nhMisHpNHdtLiyt1ggXxpbN7zgyhVaqsX%26m%3D2dDN0EuAqbkFtlT4a-etxnIejceIeDxGVMpzrMbSWX683aGwy8YAnjM-BNeMLCKN%26s%3DqWU8AkYcQfCc30olCkiOeBCrsy0NCgUVQz5HrwqHWbk%26e%3D> is currently listed as a software package, but it would actually be more appropriate to list it as an experiment data package. In addition, I would like to add ExperimentHub resources to the package. Is there a process for changing the classification of the package from "software" to "experiment data"? I understood that I would need to update the biocViews of my package accordingly to include data package-specific views and ExperimentHub-specific views, is that something that I should do BEFORE or AFTER, the Bioc team internally changes which manifest the package is listed under? Thanks & Best, Ludwig [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/17k3wdzoHUlBP39j98REuD1e35Rv5rcGZu8jzG9zG98e58iG7P32jI7Qk_iwZw4UxUWIoLvkF1esfcANGtgDHpnSC08ehumn7_wvLtA7NdDCB4LuzX7AZYr7TaZPKS6h9fkX8xnfk5gmZIyNBW0TwTGgFpT60kU_iyxmqXeE-SeC-pW5EWmguHCpFE-0kWhL4SfxIKIUdwhX3qPMiJRKdq2uNLcTqces_Pa5PR_ikHk8LjJAMJyOm2ICGRPf9pk8rK7Hb9Zcl4ElOtuyi2Rlp0YaTIjh3OT324Q363gJlFprvHqLAA5ilDKV9GO7ZvRz8/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel<https://secure-web.cisco.com/1cO0VSp0UoqZBbF9ipPMl0wjGzSfonPEzR-Bf1ZKQAa5_5d3Q5NXirKIpXY814VYxFPQ3SSND43WeLXh9ZJbW5agbWLghy83LJsnhhAJagUmUQ0VETTUYKPLztu-s3WQDB8b0WcPtBECZYLC5S-Y33afm33Qcew-1mOGjc7lfbo-n7BGNWf5zrFOecwCU4BfDD6UbhJ4kGyUXQyoiQhftfr4zwXe1TyVxSeai2hHIVE2N3YDh2dEbJgtNqckuMTTlB3kkb6vHepqoMMqdOqTYUCX13fr43lydyzXpetybywwJUyiVMXXBvSBl8xhsMeBY/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cisco.com_17k3wdzoHUlBP39j98REuD1e35Rv5rcGZu8jzG9zG98e58iG7P32jI7Qk-5FiwZw4UxUWIoLvkF1esfcANGtgDHpnSC08ehumn7-5FwvLtA7NdDCB4LuzX7AZYr7TaZPKS6h9fkX8xnfk5gmZIyNBW0TwTGgFpT60kU-5FiyxmqXeE-2DSeC-2DpW5EWmguHCpFE-2D0kWhL4SfxIKIUdwhX3qPMiJRKdq2uNLcTqces-5FPa5PR-5FikHk8LjJAMJyOm2ICGRPf9pk8rK7Hb9Zcl4ElOtuyi2Rlp0YaTIjh3OT324Q363gJlFprvHqLAA5ilDKV9GO7ZvRz8_https-253A-252F-252Fstat.ethz.ch-252Fmailman-252Flistinfo-252Fbioc-2Ddevel%26d%3DDwMFAg%26c%3DWO-RGvefibhHBZq3fL85hQ%26r%3DyPjzQ73-fmNXaJPV1gz9oHaqor6pHH3nhMisHpNHdtLiyt1ggXxpbN7zgyhVaqsX%26m%3D2dDN0EuAqbkFtlT4a-etxnIejceIeDxGVMpzrMbSWX683aGwy8YAnjM-BNeMLCKN%26s%3D23EdhH0R2ts5Bopytws2iiBmT23Ts-k3ejossUQoKxA%26e%3D> This email message may contain legally privileged and/or confidential information. 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