[Bioc-devel] Unclear build failure ‘appending gaps’

A new error showed up: logical subscript contains NAs


*--*

*Yue (Jason) Zhao*

PhD Candidate, Bioinformatics Program

Boston University

yuezh at bu.edu


On Sat, Mar 23, 2019 at 11:22 AM Michael Lawrence via Bioc-devel <
bioc-devel at r-project.org> wrote:

This is due to some buggy changes to the internals of the S4Vectors
package. I should be able to fix these today.

On Sat, Mar 23, 2019 at 7:41 AM Karl Stamm <karl.stamm at gmail.com> wrote:

My package rgsepd has failed build recently.

I don't understand the error message, and need some guidance. It says

Error

building vignette, "appending gaps is not supported"

I can't find that statement anywhere in Google, so I don't know what

it's

referring to.  Unfortunately, my package is an automation pipeline, so
there's one line of code that runs many others, and the line triggering

the

error could represent any part of my pipeline.

I've checked the build on my end before uploading code changes, so I

cant

reproduce the error. My build was okay until very recently, I have

added a

CITATION file which is rather lengthy, and may be impacting the vignette
build?

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