Hello Bioconductor Community,
A quick update about the latest developments on the Bioconductor Docker
images.
We have updated the ?devel? image to inherit from the latest
?rocker/rstudio:4.0.2? image. This means that the
`bioconductor/Bioconductor_docker:devel` image, which is now available will
be running on,
1. Ubuntu 20.04
2. R version 4.0.2
3. Bioconductor version 3.12.
One major update to the system requirements was the installation of the
?libglpk-dev? which seemed to have caused issues installing the ?igraph?
package. The version number of this image which can be queried through the
docker command is going to be 3.12.13.
If you pull the updates from dockerhub using,
docker pull bioconductor/Bioconductor_docker:devel
And check the version number using, (the result is going to be 3.12.13.
docker inspect --format '{{ index .Config.Labels.version}}'
bioconductor/bioconductor_docker:devel
NOTE: The release image stayed exactly the same but with the addition of
the `libglpk-dev` package. The RELEASE_3_11 image did not get updated to
Ubuntu 20.04. It is still based on Ubuntu 18.04. The devel image now works
on a different version of Ubuntu (20.04) as compared to the build system
(18.04. The support for the 18.04 image on rocker is no longer available.
The inspect label command for RELEASE_3_11 (given below) should produce
the new version number 3.11.11. Do not forget to pull. This is a bug fix
with regards to the igraph package?s missing dependency.
docker inspect --format '{{ index .Config.Labels.version}}'
bioconductor/bioconductor_docker:RELEASE_3_11
If you have any further questions, please reply to this thread.
Best regards,
Nitesh Turaga
Bioconductor Core Team
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]