Message-ID: <CAC2h7utcP8G1mDwgHN4k0M61umSAUDJn70ZBqP1orzh4=0gRTA@mail.gmail.com>
Date: 2015-10-20T14:55:13Z
From: Kasper Daniel Hansen
Subject: [Bioc-devel] upgrading
So I have an R-devel where I have a previous (pre-bioc-3.2) installed
version of BiocInstaller.
1) I re-compile R-devel today.
2) I run
source("http://www.bioconductor.org/biocLite.R")
which gives me BiocInstaller 1.20.0. However, the current one for
Bioc-devel is 1.21.1.
When I try to push to a higher level version, by doing
library(BiocInstaller)
useDevel(TRUE)
I get
> useDevel(TRUE)
Error: 'devel' version requires a more recent R
If I now try to upgrade I get
> biocLite("BiocUpgrade")
Error: Bioconductor version 3.2 cannot be upgraded with R version 3.3.0
This all looks problematic. How to I upgrade to Bioc-devel using R-devel?
Btw. there are no instructions anymore at
https://www.bioconductor.org/developers/how-to/useDevel/
Best,
Kasper
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