[Bioc-devel] Kunpeng2 compilation error -lopenblas

Wonderful, thanks for confirming Martin.

Best wishes
Mike

From: Martin Grigorov <martin.grigorov at gmail.com>
Date: Wednesday, 23 October 2024 at 09:42
To: Morgan, Michael <michael.morgan at abdn.ac.uk>
Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas
You don't often get email from martin.grigorov at gmail.com. Learn why this is important<https://aka.ms/LearnAboutSenderIdentification>
CAUTION: External email. Ensure this message is from a trusted source and exercise caution before clicking links/opening attachments.

Hi,

This issue has been fixed earlier today.
It should be OK in the next build (tomorrow).

Regards,
Martin

Hi Bioc team,
I?m the maintainer of miloR. I have a build compilation error on kunpeng2 on Bioc 3.20 related to missing openblas:

g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o miloR.so RcppExports.o computeMatrices.o fitGeneticPLGlmm.o fitPLGlmm.o inference.o invertPseudoVar.o multiP.o paramEst.o pseudovarPartial.o solveQP.o utils.o -lopenblas -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -fopenmp -L/home/biocbuild/R/R-4.4.1/lib -lR

/home/biocbuild/miniforge3/bin/../lib/gcc/aarch64-conda-linux-gnu/14.2.0/../../../../aarch64-conda-linux-gnu/bin/ld: cannot find -lopenblas:
No such file or directory
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/R/R-4.4.1/share/make/shlib.mk:10<http://shlib.mk:10/>: miloR.so] Error 1
ERROR: compilation failed for package ?miloR?

This error doesn?t come up on the other linux build servers, MacOS or Windows. Is this an issue with the configuration of the build server, or with the openEuler distro?

Thanks for your help.
Mike Morgan

Pronouns: He/Him
Lecturer
6.17, Institute of Medical Sciences
School of Medicine, Medical Sciences & Nutrition
University of Aberdeen
Foresterhill
Aberdeen
AB25 2ZD
Tel: 01224 437397
Web: https://www.morganlab.co.uk/


The University of Aberdeen is a charity registered in Scotland, No SC013683.
Tha Oilthigh Obar Dheathain na charthannas cl?raichte ann an Alba, ?ir. SC013683.


_______________________________________________
Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel


The University of Aberdeen is a charity registered in Scotland, No SC013683.
Tha Oilthigh Obar Dheathain na charthannas cl?raichte ann an Alba, ?ir. SC013683.