Message-ID: <m21x3asajo.fsf@macaroni.local>
Date: 2005-09-27T17:08:43Z
From: Seth Falcon
Subject: [Bioc-devel] Latex/Rd problems?
In-Reply-To: <CEA39A213F7F2E44A0DED9210BCD352FB404D3@VAIEXCH04.vai.org> (Karl Dykema's message of "Tue, 27 Sep 2005 11:46:05 -0400")
On 27 Sep 2005, Karl.Dykema at vai.org wrote:
> I seem to be having a new problem with my ideogram package passing
> the CHECK on 3 of the 4 systems on the daily package check results
> page. Packages biocViews and geneSpring also have similar errors.
>
> I have gone through my .Rd and .Rnw files without finding any
> problems that are obvious. I have hopefully overlooked something
> rudimentary that a LaTex guru will easily spot. I can replicate the
> error on my windows PC with the current development version of R,
> but have not been able to figure anything out on my own. Thanks in
> advance if anyone can help!
I just committed a fix for you. The problem seemed to be that you had
unespaped '$' characters. Wrapping them in \code{something$else}
fixed things.
I also converted a few files that had mixed line ending style (a
little Windows a little unix) to unix style. Files should be one or
the other.
How did I find the error?
After running R CMD check, look in the ideograph.Rcheck dir and browse
the ideogram-manual.log file. This told me where to look in the
ideograpm-manual.tex file and this told me where to fix the problem in
the Rd file.
+ seth