It looks like our normal post-release mail to the biomart.org people to
let them know about a new set of marts has not gone through, so I'll
give them a shout. I can't help you on on a biomaRt workaround though...
On 01/03/2012 06:01 PM, Cook, Malcolm wrote:
Hi,
I am hoping to access the latest S. pombe biomart
(http://fungi.ensembl.org/biomart/martview/) using the R wrapper
library "biomaRt"
I believe the mart must be registered with the biomart service
registry for this to be possible, but, currently I don't see
fungi_mart_12 or fungi_sequence_mart_12 among
http://www.biomart.org/biomart/martservice?type=registry
Since I'm unsure where lies the responsibility for this, I'm cc:ing
mart-dev and the biomaRt package developer in this inquiry.
Can someone you please advise when or whether this latest S Pombe will
be registered with biomart?
And, perhaps there is an interim workaround allowing me to use
bioconductor's biomaRt package with this resource in absence of it
being registered?
Cheers and Thanks,
~Malcolm Cook
-----Original Message-----
From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On
Behalf Of Dan Staines
Sent: Saturday, December 24, 2011 7:15 AM
To: Giulietta
Cc: announce at ensembl.org; dev at ensembl.org; eg_internal at ebi.ac.uk
Subject: Re: [ensembl-dev] [Eg_internal] Ensembl Genomes release 12
On 12/16/2011 02:48 PM, Giulietta wrote:
/Note, EG 12 will be available on ftp next week./
We are happy to announce the availability of FTP data for EG12, and
apologise for the late running of this service.
Seasons greetings,
Dan.
--
Dan Staines, PhD Ensembl Genomes Technical Coordinator
EMBL-EBI Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/