----- Original Message -----
From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
To: "Gabe Becker" <becker.gabe at gene.com>
Cc: bioc-devel at r-project.org, "Jim Fitzgerald" <
fitzgerald.james at gene.com>
Sent: Thursday, October 30, 2014 10:23:58 AM
Subject: Re: [Bioc-devel] R-devel update schedule/strategy for Bioc
----- Original Message -----
From: "Gabe Becker" <becker.gabe at gene.com>
To: bioc-devel at r-project.org, "Jim Fitzgerald"
<fitzgerald.james at gene.com>
Sent: Thursday, October 30, 2014 10:21:17 AM
Subject: [Bioc-devel] R-devel update schedule/strategy for Bioc
devel build machines
Bioc admins,
We have an automatic build/test mechanism for our internal packages
which
we'd like to match the Bioc build machines as closely as possible.
AFAIU,
the exact commit-specific version of R-devel used on your devel
build
server changes occasionally within Bioc releases, and we'd like to
mirror
those changes on our system.
Is there a set schedule for when the exact commit of R-devel on
your
build
server changes?
No. We do it in response to the following events:
- significant changes in the R code
- "seems like a while since we last updated R"
- milestones leading up to release (release candidates, alpha, beta,
etc).
You could scrape the build report daily to see if the version of R
has changed.
Also, do you guys grab them as tarballs, or
checkout/update
from the svn?
BTW, I don't know if you are concerned about platforms other than Linux,
but for Mac and Windows we install the binaries provided by CRAN, we don't
build R from source on these platforms any more.
Dan
Thanks,
~G
--
Computational Biologist
Genentech Research
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