[Bioc-devel] Question about org.Dr.eg.db package

This should probably be posed to the support site.  What version of the
package are you using?  Where
are you seeing coordinates?  I would expect those to be obtained from the
TxDb package, or perhaps
from AnnotationHub.

columns(org.Dr.eg.db)

[1] "ACCNUM"       "ALIAS"        "ENSEMBL"      "ENSEMBLPROT"
"ENSEMBLTRANS"

 [6] "ENTREZID"     "ENZYME"       "EVIDENCE"     "EVIDENCEALL"  "GENENAME"


[11] "GO"           "GOALL"        "IPI"          "ONTOLOGY"
"ONTOLOGYALL"

[16] "PATH"         "PFAM"         "PMID"         "PROSITE"      "REFSEQ"


[21] "SYMBOL"       "UNIGENE"      "UNIPROT"      "ZFIN"


On Thu, Aug 13, 2020 at 2:13 PM Margolin, Gennady (NIH/NICHD) [C] via

Hello,

I have a short question ? how do I figure the genome version for
org.Dr.eg.db package? I couldn?t see it in the DESCRIPTION and also it?s
not in org.Dr.eg_dbInfo() output. It would be nice to know if this is
danRer11/GRCz11 or some other assembly, as there are coordinates present in
the DB.

Thank you,
Gennady

        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

The information in this e-mail is intended only for the ...{{dropped:18}}