Message-ID: <CAANT7+ULJGJA3jLoT23GfZxNj==zTVEEZUsz2gtynjBhn6nCAQ@mail.gmail.com>
Date: 2020-08-13T18:46:04Z
From: Vincent Carey
Subject: [Bioc-devel] Question about org.Dr.eg.db package
In-Reply-To: <C7811EF3-A3BE-4DB5-8364-57E536F52388@nih.gov>
This should probably be posed to the support site. What version of the
package are you using? Where
are you seeing coordinates? I would expect those to be obtained from the
TxDb package, or perhaps
from AnnotationHub.
> columns(org.Dr.eg.db)
[1] "ACCNUM" "ALIAS" "ENSEMBL" "ENSEMBLPROT"
"ENSEMBLTRANS"
[6] "ENTREZID" "ENZYME" "EVIDENCE" "EVIDENCEALL" "GENENAME"
[11] "GO" "GOALL" "IPI" "ONTOLOGY"
"ONTOLOGYALL"
[16] "PATH" "PFAM" "PMID" "PROSITE" "REFSEQ"
[21] "SYMBOL" "UNIGENE" "UNIPROT" "ZFIN"
On Thu, Aug 13, 2020 at 2:13 PM Margolin, Gennady (NIH/NICHD) [C] via
Bioc-devel <bioc-devel at r-project.org> wrote:
> Hello,
>
> I have a short question ? how do I figure the genome version for
> org.Dr.eg.db package? I couldn?t see it in the DESCRIPTION and also it?s
> not in org.Dr.eg_dbInfo() output. It would be nice to know if this is
> danRer11/GRCz11 or some other assembly, as there are coordinates present in
> the DB.
>
> Thank you,
> Gennady
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
--
The information in this e-mail is intended only for the ...{{dropped:18}}