[Bioc-devel] Can we get a rheMac2 BSgenome?
Hi Steve,
On 03/27/2012 01:10 PM, Steve Lianoglou wrote:
For what it's worth, I whipped up a rheMac2 BSgenome object. The source package is here: http://cbio.mskcc.org/Public/Leslie/lianos/bioc2012/BSgenome.Mmulatta.UCSC.rheMac2.tar.gz The data I used to create it along w/ the seed file is here. Maybe it will be helpful as a starting point if you guys want to whip one together officially: http://cbio.mskcc.org/Public/Leslie/lianos/bioc2012/rheMac2.BSgenome-data.tgz
Thanks! I'll check this and add it to the repo. Cheers, H.
I'm not sure if I got all the mask stuff right, so ... use at your own risk. I'll be pulling those things down by the end of the week or so. -steve On Tue, Mar 27, 2012 at 12:11 PM, Steve Lianoglou <mailinglist.honeypot at gmail.com> wrote:
Howdy, How does bioc-core feel about hosting a BSgenome for the rhesus macaque? I'm taking a shot at forging my own now, but I guess it might be generally useful (but perhaps not, since it hasn't landed in bioc yet). Anyway, I'd be happy to send over a drop of the raw/source package w/ required data to whomever if it'll be helpful to get the genome "live" for more people. -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
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