Message-ID: <CAP8VEO7Rr4tDimR91E9aM3ToP+HvX-K=UhsasdR0pBJm7CohDw@mail.gmail.com>
Date: 2018-12-05T19:07:01Z
From: Leonardo Collado Torres
Subject: [Bioc-devel] GenomicFeatures export request
In-Reply-To: <7cbb455b69334d788c2005bdefb59e61@ESGEBEX19.win.ad.jhu.edu>
Awesome, thanks Herv?!
Best,
Leo
On Wed, Dec 5, 2018 at 1:55 PM Pages, Herve <hpages at fredhutch.org> wrote:
> Hi Leo,
>
> This is done in GenomicFeatures 1.35.4:
>
>
> https://github.com/Bioconductor/GenomicFeatures/commit/0b596c18b69f55d097aff0c6cdbbfc0b2993c4aa
>
> Cheers,
>
> H.
>
>
> On 11/15/18 09:25, Leonardo Collado Torres wrote:
> > Hi Herv?,
> >
> > Looking into the details of GenomicFeatures::exonicParts() I see that
> > this function runs GenomicFeatures:::.tidy_exons(). Would it be
> > possible to export this function? Looks like it'll be useful for some
> > work we are doing.
> >
> > We can start using it without the function being exported, and well,
> > if you prefer not to export it we could still use it in other packages
> > (though a NOTE will show up in R CMD check).
> >
> > I don't think that we'll use GenomicFeatures:::.tidy_transcripts()
> > directly although GenomicFeatures:::.tidy_exons() runs it. But well,
> > maybe other users might be interested in your tidy set of functions.
> >
> > Best,
> > Leo
>
> --
> Herv? Pag?s
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone: (206) 667-5791
> Fax: (206) 667-1319
>
>
[[alternative HTML version deleted]]