[Bioc-devel] help with Win10 TSL problem?
Hi all, in the BridgeDbR package I have a TSL issue, just on Windows10 [0]:
location <- getDatabase("Bacillus subtilis")
Error in function (type, msg, asError = TRUE) : error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version Calls: getDatabase ... getBridgeNames -> curlPerform -> <Anonymous> -> fun Execution halted This method is using the download.file() method (see [1]). I am not sure what this method uses by default. I have been googling and found a number of suggestions on how to get RCurl to use other SSL version, such as: CURL_SSLVERSION_TLSv1_2 <- 1Lopts <- RCurl::curlOptions( verbose = TRUE, sslversion = CURL_SSLVERSION_TLSv1_2)download.file(url, file, mode = "wb", .opts=opts) But I haven't found something that works. Error messages are very cryptic, and I'm running out of ideas. Does someone have a suggestion how to debug this? Maybe even have a solution? All feedback is very much appreciated! Egon 0. https://bioconductor.org/checkResults/release/bioc-LATEST/BridgeDbR/tokay1-checksrc.html 1.https://github.com/bridgedb/BridgeDbR/blob/master/R/getDatabase.R#L23
Hi, do you like citation networks? Already 51% of all citations are available <https://i4oc.org/> available for innovative new uses <https://twitter.com/hashtag/acs2ioc>. Join me in asking the American Chemical Society to join the Initiative for Open Citations too <https://www.change.org/p/asking-the-american-chemical-society-to-join-the-initiative-for-open-citations>. SpringerNature, the RSC and many others already did <https://i4oc.org/#publishers>. ----- E.L. Willighagen Department of Bioinformatics - BiGCaT Maastricht University (http://www.bigcat.unimaas.nl/) Homepage: http://egonw.github.com/ Blog: http://chem-bla-ics.blogspot.com/ PubList: https://www.zotero.org/egonw ORCID: 0000-0001-7542-0286 <http://orcid.org/0000-0001-7542-0286> ImpactStory: https://impactstory.org/u/egonwillighagen [[alternative HTML version deleted]]