[Bioc-devel] Help with R CMD check NOTEs

Hello,

I am getting the following NOTES at R CMD check step:

NOTE1:
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  ?MASS? ?parallel? ?S4Vectors? ?IRanges? ?GenomeInfoDb?
  ?GenomicRanges? ?GenomicAlignments? ?rtracklayer?
Adding so many packages to the search path is excessive and importing
selectively is preferable.

NOTE2:
* checking re-building of vignette outputs ... NOTE
Warnings in re-building vignettes:
  Warning: file stem ?/fig2? is not portable
  Warning: file stem ?/fig3? is not portable

Can anyone suggest how I can fix these? Thanks in advance!

Best,
Anusha

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