There is information on this page:
http://bioconductor.org/developers/how-to/troubleshoot-build-report/
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Ted
Natoli <ted.e.natoli at gmail.com>
*Sent:* Thursday, December 10, 2020 1:17 PM
*To:* jmacdon at u.washington.edu <jmacdon at u.washington.edu>
*Cc:* Bioc-devel <bioc-devel at r-project.org>
*Subject:* Re: [Bioc-devel] updating released version of package
Ah, I see. Ok thanks for that clarification. Do you know roughly how long
it might take to build?
On Thu, Dec 10, 2020 at 11:15 AM James W. MacDonald <jmacdon at uw.edu>
wrote:
You also have a commit from yesterday in master that isn't yet reflected
on the build machine, again because it takes time for the build machine
build stuff. IIRC we are over 24 hours per build, but that may be old
(FAKE NEWS!).
On Thu, Dec 10, 2020 at 11:09 AM James W. MacDonald <jmacdon at uw.edu>
wrote:
It looks like you bumped it just yesterday:
commit 5a9929aed33e40c11609f3d064b114d95d95e6cb
Author: Ted Natoli <ted.e.natoli at gmail.com>
Date: Wed Dec 9 16:42:16 2020 -0500
fixing version bump
commit accd8a5871fe38a8a1f63b32b4e79d2640e86792
Author: Ted Natoli <ted.e.natoli at gmail.com>
Date: Wed Dec 9 16:32:47 2020 -0500
update RELEASE version number
And it takes a while to propagate, so you are probably being too
impatient.
Jim
On Thu, Dec 10, 2020 at 10:59 AM Ted Natoli <ted.e.natoli at gmail.com>
wrote:
Hi James,
Thanks for the response. The corresponding changes were committed to
master branch on November 23. The development build report seems to be
using the correct code, or at least close to it, as the most recent
it shows there is from December 8. I did push to both github and
bioconductor repos and I did bump the version number too, which is
reflected in the development build report but not release.
Here are links to the build reports if it's helpful.
devel:
Thanks again,
Ted
On Thu, Dec 10, 2020 at 10:41 AM James W. MacDonald <jmacdon at uw.edu>
wrote:
Did you bump your version number? How long has it been since you
committed the changes? If you have a github repo, you remembered to
both the Bioconductor and GitHub repos?
On Thu, Dec 10, 2020 at 10:19 AM Ted Natoli <ted.e.natoli at gmail.com>
wrote:
Hello all,
I'm trying to update the released version of my package, cmapR,
because one
of the packages it depends on has been deprecated and hence install
cmapR now fails.
I've followed the instructions here in order to get those changes
to
the released version of the package:
However, I don't see that the released version has been updated.
Looking at
the build reports, the latest commit reflected there is from before I
made
the code changes. How do I get these changes to propagate to the
release
branch?
I'm sure I must be missing something very basic, but any help would
appreciated.
Thanks in advance,
Ted
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