[Bioc-devel] RFC for a container for ChIP-chip data

column

any concerns with this plan?  any other formats for proprietary
ChIP-chip data that I don't know about but should?

Vince,

This looks good for non-tiling Chip-chip data, but not for tiling or
promoter-tiling chips which are rapidly becoming the standard (?) for
performing chip-chip analysis.  I would vote for making some distinction
between gene-based chip-chip data and tiling/promoter-based chip, as the
analysis methods and featureData are quite distinct from PCR-product based
arrays.  This is probably just a naming thing, but I think ChIPset implies
different things to different people.  Or, if you go with ChIPset, I guess a
TilingChIPset could be created?  I'm not proposing a solution, but just
pointing out that to many people, ChIP-chip data will imply tiling-array data
with genomic locations, etc. and to others it will not.

Sean