From: "Aedin Culhane" <aedin at jimmy.harvard.edu>
To: bioc-devel at r-project.org
Sent: Friday, August 28, 2015 2:07:18 PM
Subject: Support site
Hi
I tried to query the support site and got "connection aborted".
Therefore I tried a "popular" query and entered Limma and still get
connection aborted. Any suggestions. I enclose a screen short of the
Error and the traceback below.
Aedin
Environment:
Request Method: GET
Request URL:
https://support.bioconductor.org/local/search/page/?q=RNA
Django Version: 1.6.5
Python Version: 2.7.6
Installed Applications:
['django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.messages',
'django.contrib.staticfiles',
'django.contrib.sitemaps',
'compressor',
'django.contrib.sites',
'django.contrib.admin',
'django.contrib.humanize',
'django.contrib.flatpages',
'django.contrib.sessions',
'biostar.apps.users',
'biostar.apps.util',
'biostar.apps.posts',
'biostar.apps.messages',
'biostar.apps.badges',
'biostar.apps.planet',
'biostar.server',
'allauth',
'allauth.account',
'allauth.socialaccount',
'allauth.socialaccount.providers.persona',
'allauth.socialaccount.providers.google',
'allauth.socialaccount.providers.facebook',
'allauth.socialaccount.providers.github',
'allauth.socialaccount.providers.stackexchange',
'allauth.socialaccount.providers.twitter',
'haystack',
'crispy_forms',
'djcelery',
'kombu.transport.django',
'south']
Installed Middleware:
('django.middleware.common.CommonMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'django.middleware.clickjacking.XFrameOptionsMiddleware',
'django.contrib.flatpages.middleware.FlatpageFallbackMiddleware',
'biostar.server.middleware.Visit')
Traceback:
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/core/handlers/base.py"
in get_response
112. response = wrapped_callback(request,
*callback_args, **callback_kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/base.py"
in view
69. return self.dispatch(request, *args, **kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/base.py"
in dispatch
87. return handler(request, *args, **kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/list.py"
in get
137. self.object_list = self.get_queryset()
File "/home/www-data/biostar-central/biostar/server/search.py" in
get_queryset
62. query =
SearchQuerySet().filter(content=content).highlight()[:50]
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/query.py"
in __getitem__
268. self._fill_cache(start, bound)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/query.py"
in _fill_cache
166. results = self.query.get_results(**kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/__init__.py"
in get_results
644. self.run(**kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/elasticsearch_backend.py"
in run
949. results = self.backend.search(final_query,
**search_kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/__init__.py"
in wrapper
34. return func(obj, query_string, *args, **kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/elasticsearch_backend.py"
in search
516. doc_type='modelresult')
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
in decorate
93. return func(*args, query_params=query_params,
**kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
in search
859. return self._search_or_count('_search', query,
**kwargs)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
in _search_or_count
836. query_params=query_params)
File
"/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
in send_request
281. raise exc.info
Exception Type: ProtocolError at /local/search/page/
Exception Value: ('Connection aborted.', error(111, 'Connection
refused'))