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[Bioc-devel] How to speed up GRange comparision

Thu, Jan 30, 2020 11:20 AM

On 1/30/20 11:10, Herv? Pag?s wrote:

Well actually not. Looks like it's broken:

 > poverlaps(GRanges("chr1:11-15"), GRanges("chr1:16-20"))
Error in isSingleNumber(minoverlap) : object 'minoverlaps' not found

H.

Thread (14 messages)

web working How to speed up GRange comparision Jan 29 Michael Lawrence How to speed up GRange comparision Jan 29 Jianhong Ou, Ph.D. How to speed up GRange comparision Jan 29 Hervé Pagès How to speed up GRange comparision Jan 29 Hervé Pagès How to speed up GRange comparision Jan 29 Jianhong Ou, Ph.D. How to speed up GRange comparision Jan 29 Hervé Pagès How to speed up GRange comparision Jan 29 web working How to speed up GRange comparision Jan 29 Hervé Pagès How to speed up GRange comparision Jan 30 Michael Lawrence How to speed up GRange comparision Jan 30 Hervé Pagès How to speed up GRange comparision Jan 30 Hervé Pagès How to speed up GRange comparision Jan 30 Michael Lawrence How to speed up GRange comparision Jan 30 Hervé Pagès How to speed up GRange comparision Jan 30