[Bioc-devel] ¿A useful addition to MotifDb package?
Hi Steve, Very timely, very helpful! Just yesterday I proposed to Martin, as a taks for the coming sprint: 4) Add the new TF PWMs from ENCODE into MotifDb I had not yet gotten as far as locating the data at ebi. Thanks! If you care to take a look, perhaps comment, this Bioc workflow became visible yesterday, but has not yet been generally announced: http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/ - Paul
On Oct 9, 2012, at 7:53 AM, Steve Lianoglou wrote:
Hi Paul + devs, Alex Reynolds's answer to this biostar post: http://www.biostars.org/post/show/54511 Lead me to this paper: http://www.sciencedirect.com/science/article/pii/S0092867412006393 and this dataset: ftp://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/byDataType/footprints/README Which made me write this email. -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact