[Bioc-devel] Build error - Latex environment in vignettes
Hi Sergi, I agree these are due to newer pandoc versions on these machines. I'm going make sure both linux and both macs use the same versions this week so we get consistent results. Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Sergio Picart Armada <sergi.picart at upc.edu>
Sent: Sunday, February 26, 2023 3:38 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Build error - Latex environment in vignettes
Sent: Sunday, February 26, 2023 3:38 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Build error - Latex environment in vignettes
***ATTENTION: This email came from an external source. Do not open attachments or click on links from unknown senders or unexpected emails.*** Dear bioc-devel list, I am the maintainer of the FELLA package. I got some BUILD errors related to the LaTeX environments: Release: error only on lconway <https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_release_bioc-2DLATEST_FELLA_lconway-2Dbuildsrc.html&d=DwIFaQ&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=FKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA&m=SZC3cdDF3FAwwp3w0YNtiJgKxdcbNSGJhvWXgM_alRVi9A4Efgp7PjfMKlfEIXPF&s=7rnUtLpHW3am2NIjFmW92rBw__T2ZgbjBTj6u637lMM&e= > * creating vignettes ... ERROR --- re-building ?musmusculus.Rmd? using rmarkdown ! LaTeX Error: Environment cslreferences undefined. Devel: error only on nebbiolo1 <https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_FELLA_nebbiolo1-2Dbuildsrc.html&d=DwIFaQ&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=FKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA&m=SZC3cdDF3FAwwp3w0YNtiJgKxdcbNSGJhvWXgM_alRVi9A4Efgp7PjfMKlfEIXPF&s=IkRNxO5WoxQuxSU3DvkGmDDOWYM85o5MD7W6goHeCtE&e= > * creating vignettes ... ERROR --- re-building ?musmusculus.Rmd? using rmarkdown ! LaTeX Error: Environment CSLReferences undefined. I suspect the pandoc version on the testing machines may have something to do with it. What is strange, this only happens in the macOS machine (release) and linux (devel), in two different vignettes. Any recommendations on how to handle this? Thank you Sergi [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=FKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA&m=SZC3cdDF3FAwwp3w0YNtiJgKxdcbNSGJhvWXgM_alRVi9A4Efgp7PjfMKlfEIXPF&s=Wj1QQnjw002k-fRGntmA9DTn_GZR9I98p8CSIzuP-TQ&e=