[Bioc-devel] EnMCB reduce dependencies
IlluminaHumanMethylation450kanno.ilmn12.hg19 is primarily a collection of data.frames isn't it? I notice that the Illum...anno... package itself depends on minfi, which seems unnecessary. But perhaps Kasper will comment.
On Fri, May 21, 2021 at 5:32 AM xin wwa <whirlsyu at gmail.com> wrote:
Dear Bioconductor team,
Hi, thank you for reading my email.
Our package has too many dependencies.
Therefore, we may want to reduce dependencies.
The main reason is that we use
minfi::getAnnotation("IlluminaHumanMethylation450kanno.ilmn12.hg19"). And
minfi package we used has lots of dependencies.
This is only an annotation table that contains some probe information.
Is there a way to load the annotation file independent of minfi package?
Thanks in advance. Any help is appreciated!
Regards,
Xin Yu
Ph.D. student of Biomedical Informatics
College of Bioinformatics - Huazhong Agricultural University
whirlsyu at gmail.com
yuxin at webmail.hzau.edu.cn
tel: (+86) 186-5313-5769
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