[Bioc-devel] Workflow builder failing at postprocessing step

Thanks Leo for drawing our attention to this issue. It will probably require
some additional modifications to the postprocessing scripts in order to
account for the now missing Mac tar balls. I will look into this.

Cheers,
Andrzej

On Wed, Oct 11, 2017 at 8:09 PM, Leonardo Collado Torres <lcollado at jhu.edu>
wrote:

Hi,

I recently pushed some changes to recountWorkflow** that triggered new
"postprocessing" jobs by the workflow builder. The last few (#412 up
to 415) failed and I can see at

http://docbuilder.bioconductor.org:8080/job/postprocessing/label=master/415/console
that the error is related to the retirement of the Mac workflow build
machine:

+ true
+ MACREPO=/var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4
+ mkdir -p /var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4
+ rm -f
/var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4/recountWorkflow_*.tgz
+ cp /var/lib/jenkins/repository/recountWorkflow/*.tgz
/var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4
cp: cannot stat '/var/lib/jenkins/repository/recountWorkflow/*.tgz':
No such file or directory
Build step 'Execute shell' marked build as failure

Hopefully the Mac tar ball part can be ignored for now. I just wanted
to check if the recount workflow looked ok after I made some changes
suggested by Andrzej in another thread
https://stat.ethz.ch/pipermail/bioc-devel/2017-August/011444.html.


Thanks,
Leo

** Changes I made are from versions 0.99.32 to 0.99.37
https://github.com/LieberInstitute/recountWorkflow/commits/master