Message-ID: <vymh59x3jg98e88m1u3x9s73.1445354344352@email.android.com>
Date: 2015-10-20T15:19:04Z
From: Robert Castelo
Subject: [Bioc-devel] upgrading
Try in a fresh run:
remove.packages("BiocInstaller")
source("http://bioconductor.org/biocLite.R")
cheers,
robert.
-------- Original message --------
From: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Date:20/10/2015 16:55 (GMT+01:00)
To: bioc-devel at r-project.org
Subject: [Bioc-devel] upgrading
So I have an R-devel where I have a previous (pre-bioc-3.2) installed
version of BiocInstaller.
1) I re-compile R-devel today.
2) I run
? source("http://www.bioconductor.org/biocLite.R")
which gives me BiocInstaller 1.20.0.? However, the current one for
Bioc-devel is 1.21.1.
When I try to push to a higher level version, by doing
? library(BiocInstaller)
? useDevel(TRUE)
I get
> useDevel(TRUE)
Error: 'devel' version requires a more recent R
If I now try to upgrade I get
> biocLite("BiocUpgrade")
Error: Bioconductor version 3.2 cannot be upgraded with R version 3.3.0
This all looks problematic.? How to I upgrade to Bioc-devel using R-devel?
Btw. there are no instructions anymore at
? https://www.bioconductor.org/developers/how-to/useDevel/
Best,
Kasper
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