Message-ID: <CAMomwMqy0VpqyKLVg+ycauccpU5SRdYfDne+1AJNkeJmO1DfyA@mail.gmail.com>
Date: 2023-08-10T11:09:30Z
From: Martin Grigorov
Subject: [Bioc-devel] [+externe Mail+] Re: pwOmics package get error message for Linux check
In-Reply-To: <6b862017c2454b46b207a83a474079bb@med.uni-goettingen.de>
Dear Maren,
Do you need more help with this ?
Both https://code.bioconductor.org/browse/pwOmics/commits/devel and
https://github.com/MarenS2/pwOmics don't have the change yet.
Regards,
Martin
On Tue, Aug 8, 2023 at 3:39?PM Sitte, Maren <
Maren.Sitte at med.uni-goettingen.de> wrote:
> Dear Martin,
>
>
> thank you very much for the quick response.
>
> I will apply your advice and add the package to "Suggests".
>
>
> Kind regards
>
> Maren
>
>
> ------------------------------------------------------
>
> NGS Integrative Genomics (NIG), Core Unit
> Department of Human Genetics
> University Medical Center G?ttingen (UMG)
> Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany
> Contact : 0551 39-60778
> ------------------------------
> *Von:* Martin Grigorov <martin.grigorov at gmail.com>
> *Gesendet:* Dienstag, 8. August 2023 14:36:27
> *An:* Sitte, Maren
> *Cc:* Schoeps, Torsten; bioc-devel at r-project.org
> *Betreff:* [+externe Mail+] Re: [Bioc-devel] pwOmics package get error
> message for Linux check
>
> Hi,
>
> On Tue, 8 Aug 2023 at 12:32, Sitte, Maren <
> Maren.Sitte at med.uni-goettingen.de> wrote:
>
>> Dear Bioconductor Developers,
>>
>>
>> I received an email that my package "pwOmics" gets an error in the check
>> under Linux.
>> Install and build gets an OK, but check shows an error.
>>
>> I had a look and the problem seems to be:
>>
>> > BiocGenerics:::testPackage("pwOmics")
>> Error in library("RUnit", quietly = TRUE) :
>> there is no package called 'RUnit'
>> Calls: <Anonymous> -> library
>> Execution halted
>>
>> I checked and the RUnit package is still available on Bioconductor and
>> can still be installed. So I can't fully understand the error message.
>> Could you help me resolve this error message?
>
>
> You need to add RUnit in the list of ?Suggests? in the DESCRIPTION file.
>
> Regards,
> Martin
>
>
>>
>> Thank you for the support!
>> Kind regards
>> Maren
>>
>>
>> ------------------------------------------------------
>>
>> NGS Integrative Genomics (NIG), Core Unit
>> Department of Human Genetics
>> University Medical Center G?ttingen (UMG)
>> Justus-von-Liebig-Weg 11, 37077 G?ttingen, Germany
>> Contact : 0551 39-60778
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
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