Hi,
this question probably relates to Bioc docker images, thus asking here
first.
I am using biocthis GitHub action
<https://github.com/BBCG/epialleleR/blob/master/.github/workflows/check-bioc.yml>
and
I recently noticed that it started to fail with a BiocCheck message:
"ERROR: dependencies ?GenomicRanges?, ?BiocGenerics?, ?GenomeInfoDb?,
?SummarizedExperiment?, ?VariantAnnotation?, ?data.table?, ?Rcpp?, ?BH?,
?Rhtslib?, ?zlibbioc? are not available for package ?epialleleR?".
Does it relate to some changes in docker images, or BiocCheck::BiocCheck
configuration, or it's wrong invocation (in a pretty standard action
workflow)?
Best regards,
Oleksii