Message-ID: <CAOxY_Kz2-y8bBYUsx5a44c0CUodCvrMhk6ayY8MT_RSCiDPRFw@mail.gmail.com>
Date: 2022-01-29T14:42:20Z
From: Oleksii Nikolaienko
Subject: [Bioc-devel] BiocCheck fails during Github action workflow
Hi,
this question probably relates to Bioc docker images, thus asking here
first.
I am using biocthis GitHub action
<https://github.com/BBCG/epialleleR/blob/master/.github/workflows/check-bioc.yml>
and
I recently noticed that it started to fail with a BiocCheck message:
"ERROR: dependencies ?GenomicRanges?, ?BiocGenerics?, ?GenomeInfoDb?,
?SummarizedExperiment?, ?VariantAnnotation?, ?data.table?, ?Rcpp?, ?BH?,
?Rhtslib?, ?zlibbioc? are not available for package ?epialleleR?".
Does it relate to some changes in docker images, or BiocCheck::BiocCheck
configuration, or it's wrong invocation (in a pretty standard action
workflow)?
Best regards,
Oleksii
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