[Bioc-devel] Error in SlideNamesVec assignment in affylmGUI
Hi Raffaele, thanks for the message. I'm aware of this problem and in fact there are some other locations in the code that have the similar problems. I have fixed those too and the amended version will soon be on Bioc-Devel. Note that a problem has arisen with PLM normalization. Avoid it at the moment until I fix it. After thorough testing I shall see if I can fix the release version. Sorry about the errors, cheers, Keith Satterley Maintainer: affylmGUI
rcaloger wrote:
Hi, I am the mantainer of oneChannelGUI. My library is an extension of the functions available in affylmGUI. Today a was doing some testing and I realized the presence of an error when I was loading conventional 3'IVT Affymetrix arrays. During the loading of .CEL files and error occured: Error in colnames(RawAffyData at exprs) : error in evaluating the argument 'x' in selecting a method for function 'colnames' This error is present in line 3062 of main.R of affylmGUI, in function OpenCDFandTargetsfiles(). The error is removed if I modify the line to: Try(SlideNamesVec <- colnames(exprs(RawAffyData))) Cheers Raffaele