Kind of a embarrasing question. How do I see all methods defined for
a given class? I always thought I should use
showMethods(class = "SummarizedExperiment")
but the output is clearly broken somehow with many things like
Function "yieldSize":
<not an S4 generic function>
I have known about this for a long time, but I never figured out the
cause. What is people doing for this?
Update: It seems that this may be caused by methods in imported
packages, for example yieldSize is a method defined in Rsamtools.
When I explicitely do library(Rsamtools) I don't get yieldSize in the
output of showMethods(class = "SummarizedExperiment")
Kasper