Message-ID: <BL1PR12MB53013F0114A83F8B8CA5DCF5F9482@BL1PR12MB5301.namprd12.prod.outlook.com>
Date: 2024-02-12T15:20:20Z
From: Shepherd, Lori
Subject: [Bioc-devel] Package submission- external dependancy
In-Reply-To: <PAVPR02MB92072C8C8C62412AF3AD2150ED4B2@PAVPR02MB9207.eurprd02.prod.outlook.com>
Could you please provide a link to the tool for evaluation? We will take a look to see if it is feasible.
Also note it would be helpful to have an INSTALL file and list the system dependency in your DESCRIPTION as well. http://contributions.bioconductor.org/sysdep.html#sysdep
Cheers,
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of anand_mt <anand_mt at hotmail.com>
Sent: Friday, February 9, 2024 6:12 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Package submission- external dependancy
Dear core team,
I would like to submit my package trackplot <https://secure-web.cisco.com/18dm0zXkQb6S4C-RRQ5UglcqQjhYE0MQRPjZGrXqjGypAwqPpbbSewpzJo68shgBUkmJlEf9ioTus4EhDGAftp5UOtoCSiccx1tO5IecWYNssJL66VTN3WYUjntsFJCuQvLc-H3ui8xmchgESc2HvKKLuPWk4Sckd0zH3UUT8ZzhDqk-vtrqIJ6dO6THJ8nRXvyF6mbdcJBVr-L4ioYnAd0aAL9cp4tYwx7i7yi6xGFm8HXCLixvWj9oHt6DedqDVWzyC0TV9vPOX7AY4jr1jwsx8IvmXnMMLRFY0zTFAYZHuiYnZ4OtGL64hO1CGUJA5/https%3A%2F%2Fgithub.com%2FPoisonAlien%2Ftrackplot> to Bioconductor. However, it depends on an external command line tool (bwtool) that needs to be installed and located under the path.
Would this dependancy make the package eligible for Bioconductor submission?
Thank you.
Best.
Anand
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