Dear Bioconductor Developers,
I recently contributed a package `normR` for calling enrichment and
differences in ChIP-seq data (http://bioconductor.org/packages/normr/).
To test the functionality of the package, I used `testthat`. All the tests
run well when using `testthat::test()`, `R CMD build` or `R CMD check`.
However, the `normr` package landing package (
http://bioconductor.org/packages/normr/) reports "Test coverage: unknown".
I installed `covr` on my local machine and ran `covr::package_coverage()`.
It seems to work fine:
normr Coverage: 77.50%
R/NormRCountConfig.R: 50.00%
R/methods.R: 64.32%
src/em.cpp: 79.27%
R/NormRFit.R: 87.33%
src/normr_init.c: 100.00%
Is "Test Coverage: unknown" related to the Bioconductor build system not
being able to build my package on Linux? (I filed this in an earlier post
related to the unavailability of automake-1.14 for Rhtslib 1.5.3
installation)
Thank you very much,
Johannes Helmuth