[Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

@dity@@bh@gw@t m@iii@g oii u@i-m@rburg@de

Wed, Apr 5, 2023 5:56 AM

Thank you very much Lori,

$ git remote -v
origin  https://github.com/bhagwataditya/autonomics.git (fetch)
origin  https://github.com/bhagwataditya/autonomics.git (push)
upstream        git at git.bioconductor.org:packages/autonomics.git (fetch)
upstream        git at git.bioconductor.org:packages/autonomics.git (push)

$ ssh -T -v git at git.bioconductor.org
OpenSSH_8.8p1, OpenSSL 1.1.1m  14 Dec 2021
debug1: Reading configuration data /etc/ssh/ssh_config
debug1: Connecting to git.bioconductor.org [34.192.48.227] port 22.
debug1: connect to address 34.192.48.227 port 22: Connection timed out
ssh: connect to host git.bioconductor.org port 22: Connection timed out

I also went through the troubleshooting FAQ but so far could not  
identify the cause.

The ssh key that I have on my machine is there in BiocCredentials.
I noticed that it was not in my github account, which I have now added.
That didnt seem to make a difference though.

Thank you very much for helping.

Aditya

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of  
Aditya Bhagwat via Bioc-devel <bioc-devel at r-project.org>
Sent: Wednesday, April 5, 2023 7:33 AM
To: Sarvesh Nikumbh <sarvesh.nikumbh at gmail.com>
Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Fixing autonomics - ssh: connect to host  
git.bioconductor.org port 22: Connection timed out

Thank you very much Sarvesh, lovely also to hear from you - how are you? .

I had indeed failed to do these branch renamings which I now have.
Unfortunately, my ssh issue remains:

git push upstream devel
ssh: connect to host git.bioconductor.org port 22: Connection timed out
fatal: Could not read from remote repository.

Dear BioC team, could you help out, am a bit at loss here ?

Thank you very much,

Aditya

Hi Aditya,

Can you check if this is due to the recent branch name changes: default
branch name changed from 'main' to 'devel'
This was announced on the mailing-list, and also on this blogpost:
https://secure-web.cisco.com/1n72fvF59dD6BZtBdt6wi9Th7fr3G7_rRtSP9FgXzBRpHnSq-VrSgmyZlsAZ4KjMK-pSsxbs9F2zruBwHjVrdFmi4KD7vdnC-vhDy3qDgan2xX9UGFvUBU0MvtXSbXn-0RJfroqoyy3xj4ETCHFaoJ6cPKaoO-tqdefMvlf5zDYW5d4V0RKW61PLY4Qy0F_vqKxqQ2aTb_0DxWbnYs-I84vMG_6QA2TWTUGyFqE9D9gbvVQMu5GMxw6G7t7xZF_BUpdUBrgPEQKJEkundypNCsh3Of95OHse3VzpxIPUn-8j8QCV8ZgC8aZ-tVcnokUlF/https%3A%2F%2Fbioconductor.github.io%2Fbiocblog%2Fposts%2F2023-03-01-transition-to-devel%2F

Sarvesh

On Tue, 4 Apr 2023 at 19:38, Aditya Bhagwat via Bioc-devel <
bioc-devel at r-project.org> wrote:

Dear BioC team,

I am having the same error as many others (the missing BiocStyle
issue) and I wanted to fix it. But I somehow am not getting into
git.bioconductor.org anymore :

$ git fetch --all
Fetching origin
Fetching upstream
ssh: connect to host git.bioconductor.org port 22: Connection timed out
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
error: could not fetch upstream

I checked BiocCredentials and my public key is visible there.

What else could this be ? I changed institutes since my last push, in
my current setup things go through a proxyserver, could that be the
reason?

Thank you for feedback.

Aditya

--
Aditya Bhagwat
Statistics ? Bioinformatics ? Data Science
Translational Proteomics ? Philipps-University Marburg
Karl-von-Frisch-Str 2 ? 35043 Marburg ? Germany
Tel.: +49 6421 28 27403

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thanks!
-Sarvesh

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--
Aditya Bhagwat
Statistics ? Bioinformatics ? Data Science
Translational Proteomics ? Philipps-University Marburg
Karl-von-Frisch-Str 2 ? 35043 Marburg ? Germany
Tel.: +49 6421 28 27403

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Aditya Bhagwat
Statistics ? Bioinformatics ? Data Science
Translational Proteomics ? Philipps-University Marburg
Karl-von-Frisch-Str 2 ? 35043 Marburg ? Germany
Tel.: +49 6421 28 27403

[Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

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